1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagaatctctggggttttacaatgtatataattaaactctgtttctgtcaaggctctgatatataaatttgttttatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATGAATCAAAGTCTGAGGAAACCAAGGAGGCCGAGGAAACCAAGGAAGCCG
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AATCAAAGGATGCTCTTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACEST: gi|86064682|gb|DR360439.1|DR360439
genomic: AATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGAC
EST: GAGTCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATEST: gi|164103592|gb|ES153308.1|ES153308
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: GAGGAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAEST: gi|116465699|gb|EG508291.1|EG508291
genomic: GAGGAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAA
EST: GAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATEST: gi|116465718|gb|EG508310.1|EG508310
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: GAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATEST: gi|164037642|gb|ES135665.1|ES135665
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: TCCTGCTGAATCCGACC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAEST: gi|116465735|gb|EG508327.1|EG508327
genomic: TCCTGCTGAATCCGA-Cgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAA
EST: GAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATEST: gi|116482410|gb|EG525002.1|EG525002
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: GAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATEST: gi|164121228|gb|ES188340.1|ES188340
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAAT
EST: GAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGAEST: gi|124738560|gb|EH829814.1|EH829814
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGA
EST: GAATCAAAGGATGCTCCTGCTGAATCCGAC GCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGA
genomic: GAATCAAAGGATGCTCCTGCTGAATCCGACgtaagaatct ... tatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGA
aattaaactctgtttctgtcaaggctctgatatataaatttgttttatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATGAATCAAAGTCTGAGGAAACCAAGGAGGCCGAGGAAACCAAGGAAGCCG
ctctgat putative branch site (score: 4)
ttttatcct putative PPT
tctgatatataaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatctctggggttttacaatgtatataattaaactctgtttctgtcaaggctctgatatataaatttgttttatcctacagGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATGAATCAAAGTCTGAGGAAACCAAGGAGGCCGAGGAAACCAAGGAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA