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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatgaaatgtgaacttgggtctagtactgaacattctctaaaagattttgtctgatagtttgattggatttagGTTCCTTTTTGCGTGGTTATCGGATGGATGATGGGTGCCCAAATGGACCTAAATTTCCAGCTATTTGAGACGGCTACTCTGTTCATAACTGTTATTGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G55730.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116460063|gb|EG502655.1|EG502655
EST:     TGTCTTTGGGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCG                         GTTCCTTTTTGCGTGGTTATCGGATGGATGATGGGTGCCCAAATGGACCTA
genomic: TGTCTTTGGGAGTGGCTATTGGATCCTCCATTCAGATTTCTATGTTCGCGgtatgtatat ... ttggatttagGTTCCTTTTTGCGTGGTTATCGGATGGATGATGGGTGCCCAAATGGACCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctagtactgaacattctctaaaagattttgtctgatagtttgattggatttagGTTCCTTTTTGCGTGGTTATCGGATGGATGATGGGTGCCCAAATGGACCTAAATTTCCAGCTATTTGAGACGGCTACTCTGTTCATAACTGTTATTGTTG
                    taaaagatttt  TA-rich tract