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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaaatctaatccccttagctttgttgctactactattcctttggttcaatactctaaatgttgttcttgtattttaagCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCATACAAACAAGTCAAAATCGGCAATCCTCTTGAGAAAGGGACATTGTTAG

Basic information

species Arabidopsis thaliana
transcript AT1G54100.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116420799|gb|EG463391.1|EG463391
EST:     TCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGGCTG                         CTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCA
genomic: TCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGGCTGgtaacaaaat ... gtattttaagCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCA
EST: gi|116420807|gb|EG463399.1|EG463399
EST:     TCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGGCTG                         CTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCA
genomic: TCGCTGCGGTTGGAACTGCTGGTCAACGTTGCACAACTTGCCGTAGGCTGgtaacaaaat ... gtattttaagCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctactactattcctttggttcaatactctaaatgttgttcttgtattttaagCTTTTGCATGAGAGTGTCTATGACAAAGTACTCGAGCAACTGCTTACCTCATACAAACAAGTCAAAATCGGCAATCCTCTTGAGAAAGGGACATTGTTAG
                            ctctaaa  putative branch site (score: 3)
                                        ttcttgt  putative PPT
                                        ttcttgtattttaa  TA-rich tract