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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcctgaaccccaatttcagtactccaaactagtagaatatcaaaagtttattgttttgagttcctgttttgttgcagTGAATGTTCAGTGAATATTGAAGAGTTTAGAGGCGGCCAAAGAAACGATATGTGGTTGTCTCTTCAGAACATCAAAATGGGAAGGCTTCATCTTGCTATA

Basic information

species Arabidopsis thaliana
transcript AT1G53590.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124860349|gb|EH944786.1|EH944786
EST:     CTTAACATTGAAGTTGGAGACAAAGACCGATTTGTGGATGATACCCTTGG                         TGAATGTTCAGTGAATATTGAAG
genomic: CTTAACATTGAAGTTGGAGACAAAGACCGATTTGTGGATGATACCCTTGGgtttgctcct ... tttgttgcagTGAATGTTCAGTGAATATTGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaaactagtagaatatcaaaagtttattgttttgagttcctgttttgttgcagTGAATGTTCAGTGAATATTGAAGAGTTTAGAGGCGGCCAAAGAAACGATATGTGGTTGTCTCTTCAGAACATCAAAATGGGAAGGCTTCATCTTGCTATA
                                      ttcctgtttt  CT-rich tract
             aatatcaaaagtttat  TA-rich tract