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gtcagtttcctaatattttgagagagatacatttggcgagttggtgctttgctgaatggtattccctttgtggtcattttcagCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTATAAGTGGCAATGGCTTGCGAGCAGCTACAGGTTCTTACAG
species | Arabidopsis thaliana |
transcript | AT1G51690.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAG CTCTGTGATTTATATAGAAAATGATTCCATCTTTGACAAGTTCGAEST: gi|86070771|gb|DR366528.1|DR366528
genomic: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcc ... tcattttcagCTCTGTGATTTATAT-GAAAATGATTCCATCTTTGACAAGTTCGA
EST: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAG CTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTEST: gi|86070769|gb|DR366526.1|DR366526
genomic: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcc ... tcattttcagCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGT
EST: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAG CTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTEST: gi|86070768|gb|DR366525.1|DR366525
genomic: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcc ... tcattttcagCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGT
EST: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAG CTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGT
genomic: ACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcc ... tcattttcagCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGT
acatttggcgagttggtgctttgctgaatggtattccctttgtggtcattttcagCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTATAAGTGGCAATGGCTTGCGAGCAGCTACAGGTTCTTACAG
tcattttc CT-rich tract
tcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttcctaatattttgagagagatacatttggcgagttggtgctttgctgaatggtattccctttgtggtcattttcagCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTATAAGTGGCAATGGCTTGCGAGCAGCTACAGGTTCTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT