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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatcccttatagctgatacttgtttcccccctcagtttctctcatttgtggttgtgtgatttttggttattattatagGAAGAGAAAAGAAAAATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGATTAACAGTTGATGATCTCAAATATCTATTCATGG

Basic information

species Arabidopsis thaliana
transcript AT1G50410.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50410.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA10G43430.1 (Glycine max), 3'ss of exon 11
--------------gtaaagatcccttat--agctgatacttgtttcccccctcagtttctctcatttgtggttgtgtgatttttggttattatt--atagGAAGAGAAAAGAAAAATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGATTAACAGTTGATGATCTCAAATATCTATTCATGG
              |  ||  |   | ||   | |||   | |  |    |    |  |  |  |||  || ||  ||  || |    ||| ||     ||||||| || |||||||||||||| ||||| ||||| ||||| |||| |||  |  ||| ||||||  | ||||| |||||||| || ||||| |||||||
tgatatactggggtgacaaattttgtgattggggtgaagataggatgtatctgtggaatgacaaattc-tgatttcgttcttgtgttgtatcatctggcagGAAGATAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGCGGTACTGGAACTCGCCTCACAGTAGATGATCTGAAGTATCTTTTCATGG

upper sequence: AT1G50410.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv10s0071g00780.t01 (Vitis vinifera), 3'ss of exon 9
---------gtaaagatcccttatagctgatacttgtttcccccctc-----agtttctctcatttgtggttgtgtgatttttg--gttat-tattatagGAAGAGAAAAGAAAAATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGATTAACAGTTGATGATCTCAAATATCTATTCATGG
          |  | ||   | ||||  |  |  | ||    ||||      | |     ||  |||    | ||| |||||||    ||| | ||  ||||||| || || ||||||||||| ||||| ||||||||||||||   |||| | |||||||||||  | || ||||| ||||| ||||||||||||||||
tttgatgatattgatattgatgatagtggcaagctattattaccctagatgaaatcatcatcccttgatagtttgtaatttttgtcactatgttttgcagGAAGACAAGAGGAAAATGGTTGCATCTGCTTTTGGTGAAGATCAAACTGGAGGATCTGCAACTCGCCTCACCGTTGAAGATCTTAAATATCTATTCATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccccctcagtttctctcatttgtggttgtgtgatttttggttattattatagGAAGAGAAAAGAAAAATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGATTAACAGTTGATGATCTCAAATATCTATTCATGG
                                 tgatttttggttatta  TA-rich tract