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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctagtgtccattatttgcctatctatgcatacaagtacaacacatgttataattttaaaatttatcttattctgctcttgctgtcattttttatgatgatgttttcattttattttctacagAGGCTGATTTTTGATAGACCTCCAGAAGGAATTAGGAAAATAGTACTGGCCACCAATATGGCTGAGACAAGTATCACCATCAATGATGTTGTATATGTGA

Basic information

species Arabidopsis thaliana
transcript AT1G48650.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48650.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA05G34180.1 (Glycine max), 3'ss of exon 10
gtaaatctagtgtccattatttgcctatctatgcatacaagtacaacacatgttataattttaaaatttatcttattctgctcttgctgtcattttttatgatgatgttttcatttta--ttttctacagAGGCTGATTTTTGATAGACCTCCAGAAGGAATTAGGAAAATAGTACTGGCCACCAATATGGCTGAGACAAGTATCACCATCAATGATGTTGTATATGTGA
                          |   |    | | | | || || || ||   | |   | ||||||    |||     |   | | ||   || || |  ||||  ||||||   | |||| |||||| |||| ||||| |  |||  || |||  | |||||||| || || || || || ||||||||||| ||||| ||||||||||||||||| | |||| 
--------------------------aatcacatct-ctatttcaccatatatttctagtc--atatttatgcatttcaataatgtatataataaattttgttt-tgttcccattttgcctcttctgcagAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTTGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGG

upper sequence: AT1G48650.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G05480.1 (Glycine max), 3'ss of exon 10
gtaaatctagtgtccattatttgcctatctatgcatacaagtacaacacatgttataattttaaaatttatcttattctgctcttgctgtcattttttatgatgatgttttcattt-tattttctacagAGGCTGATTTTTGATAGACCTCCAGAAGGAATTAGGAAAATAGTACTGGCCACCAATATGGCTGAGACAAGTATCACCATCAATGATGTTGTATATGTGA
                          |   |   || | | | || || || |    |||   | ||||||    |||     |   ||| ||   || || |  ||||   ||||   | |||| |||||| |||| ||||| |  |||  || |||  | |||||||| || || || || || ||||||||||| ||||| ||||||||||||||||| | |||| 
-------------------------aaatcacatat-ctatttcaccatatatctctattc--atatttatgcacttcaataatgtatgtaataaattttgttt-tgttccgatttgcctcttctgcagAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTAGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGG

upper sequence: AT1G48650.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 9
gtaaatctagtgtccattatttgcctatctatgcatacaagtacaacacatgttataattttaaaatttatcttattctgctcttgctgtcattttttatgatgatgttttcattttattttctacagAGGCTGATTTTTGATAGACCTCCAGAAGGAATTAGGAAAATAGTACTGGCCACCAATATGGCTGAGACAAGTATCACCATCAATGATGTTGTATATGTGA
                  | |||| |     |  |||  | | | | || || |  |||  |||  ||| |    |||  | ||||       ||||  |||  || |||  | |   ||   | |||||| | || |||||||  ||   ||| ||| | ||||||||||| || || ||||| ||||||||||| ||||||||||| |||||||| || | |||| 
---------------gaaacttgctttaaattatatatgatttcta-acttggttaaatggtaatgtttgt----ttccacccttg-------ttttcctgaccat-tttgaactggtttgcatgcagAGGTTAATATTTGATAAGCCGGAAGATGGAGTAAGGAAAATAGTTCTTGCTACCAACATGGCTGAGACTAGTATCACCATTAATGATGTGGTTTTTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctgctcttgctgtcattttttatgatgatgttttcattttattttctacagAGGCTGATTTTTGATAGACCTCCAGAAGGAATTAGGAAAATAGTACTGGCCACCAATATGGCTGAGACAAGTATCACCATCAATGATGTTGTATATGTGA
                                  ttttcattttattttc  CT-rich tract
                  attttttatgatgatg  TA-rich tract