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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagaaactaatgcccttcattgacctaaaatttgtaattttgatcttgctaatttgtttgtgacattgcaacttcagGTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G44900.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44900.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA17G03920.1 (Glycine max), 3'ss of exon 11
---------------------------------------------------------------------------------------------------------gtaagctagaaactaatgcccttcattgacctaaaatttgta-attttgatcttgctaatttgtttgtgacattgcaactt-cagGTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAG
                                                                                                          ||   |    | | ||        |||| |     ||     ||||     || ||  |   ||        |   |||| ||| |||||||| || ||| ||||  | |||||||| || ||||||||||| ||  ||||||||||||||||| | |||||||| |||
gtaagcaaatatgcaaggttgcatgtatctggaatctggctgcaagttggcattgttcatcagtgtcccagctaagatttcaactgtcatacacattgaaagatattaccatgagtattgatatatggttttgatccttttttcaagcatttaagctttactcttaaattaacttttctttgacttgcagATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGATATCCTCTGTGTTGTGAAG

upper sequence: AT1G44900.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 3'ss of exon 11
------------------------------------------------------------------------------------gtaagctagaaactaatgcccttcattga----cctaaaatttgtaattttgatcttgctaatttgt--ttgtgac-----attgcaacttcagGTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAG
                                                                                      || | |   | |   |||  |   |||     ||  |||||     | || |  | | || ||||  || ||||     ||      | ||| |||||||| |||||  ||||| |||||||||| || ||||||||||| ||| ||||||| |||||| || | ||||||||||||
gtatgccagtagatagatttattttatgtagaaataagctaactggcattaacttgattttactgcactgatgaaaaatgatctacaaaccatgcattgtagcctcttgctgaatgatctgcaatttaatcatctgttgcttcaaaattgtgattctgaccaaaaatcctgtttccagATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctaaaatttgtaattttgatcttgctaatttgtttgtgacattgcaacttcagGTATGATTCATCGAAATCATTTGCACAAAATGTCGAGTTGACAGATCCGATCCTTTCTCGTTTTGATATCTTGTGTGTTGTCAAG
                        tgctaat  putative branch site (score: 2)
     aaatttgtaattttga  TA-rich tract