Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacctgttttacgaattaactacatacacttttgtgcccttttataccgtcttaatgttctgattttcttctcttgcagCCTTGCTATGGTGATACAGGAG

Basic information

species Arabidopsis thaliana
transcript AT1G43190.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124932449|gb|EL009708.1|EL009708
EST:     ATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAT                         CCTTGCTATGGTGATACAGGAGTGGCA
genomic: ATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCATgtatgacctg ... tctcttgcagCCTTGCTATGGTGATACAGGAGTGGCA
EST: gi|125242652|gb|EL256737.1|EL256737
EST:     TTATACAAATCCAAACCTGCCTGCAGAAACAAAAAGGCCGTTCATCGCAT                         CCTTGCTATGG
genomic: TTATACAAATCCAAACCTGCCTGCAGAA-CAAAAAGGCCGTTCATCGCATgtatgacctg ... tctcttgcagCCTTGCTATGG
EST: gi|47829251|gb|CK118935.1|CK118935
EST:     ATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAT                         CCTTGCTATGGTGATACAGGAG
genomic: ATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCATgtatgacctg ... tctcttgcagCCTTGCTATGGTGATACAGGAG
EST: gi|125106822|gb|EL160211.1|EL160211
EST:     ATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCAT                         CCTTGCTATGGTGATACAGGAGTGGCATAT
genomic: ATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCATgtatgacctg ... tctcttgcagCCTTGCTATGGTGATACAGGAGTGGCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacacttttgtgcccttttataccgtcttaatgttctgattttcttctcttgcagCCTTGCTATGGTGATACAGGAG
                                 ttctgat  putative branch site (score: 3)
 ttctgattttcttctc  CT-rich tract
 ttttata  TA-rich tract