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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaccaaggcttttaactgttcgacctcattatctattcattctcttccgcgtactatcttaacttaaatgtaaaattggcagTTCTCAGTGACCGAACATGTAAAGAGCTCAGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAATCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G36050.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124752523|gb|EH842653.1|EH842653
EST:     TACCAACAGTATACACAGATATCAGAGGACACACAATTCAATCGAATCAG                         TTCTCAGTGACCGAACATGTAAAAGAGCTCAGAAGCAGG
genomic: TACCAACAGTATACACAGATATCAGAGGACACACAATTCAATCGAATCAGgtgaaccaag ... aaattggcagTTCTCAGTGACCGAACATGTAAA-GAGCTCAGAAGCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatctattcattctcttccgcgtactatcttaacttaaatgtaaaattggcagTTCTCAGTGACCGAACATGTAAAGAGCTCAGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAATCAAG
                             tcttaac  putative branch site (score: 2)
                           tatcttaacttaaatg  TA-rich tract