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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaatactgtttcacacttcccataatgcttttgtgctgacaagatgaatttaccatgtccagtgttacttgaaatgttatttgtatccctgctcacctcactatatctgatttgttttcaccagCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAA

Basic information

species Arabidopsis thaliana
transcript AT1G34320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA20G31400.1 (Glycine max), 3'ss of exon 12
gtattaatactgtttcacacttcccataatgcttttgtgctgacaagatgaatttaccatgtccagtgttacttgaaatgttatttgtatccctgctcacctcactatatctgatttgttttcaccagCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAA
                    ||   ||    ||||| | ||| |||      | ||| |       | ||  |||  |    |||| ||   |     |       ||    ||    || |  | |||| || || || ||||| |||||||||||||| |||| ||||||||||||||||||| ||||  | ||||| || ||
-----------------tgatttttattgaactttttt-ctgccaaaggagttatacta------atattgattgtgaccaaatttttaaatcca---aatctgaaatgaaggaaacattgttgc-agCTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAA

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA10G36210.1 (Glycine max), 3'ss of exon 12
gtattaatactgtttcacacttcccataatgcttttgtgctgacaagatgaatttaccatgtccagtgttacttgaaatgttatttgtatccctgctcacctcactatatctgatttgttttcaccagCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAA
                           || |   || | || | ||| | |   ||| || |||| | ||  ||   |    | || ||   ||    |       ||   |||    ||||  | |||| || || || ||||| |||||||||||||| |||| |||||| |||||||||||| ||||  | || || || ||
-----------------------agccaaaggagttctactaataagcttatactac-atttccaatattgattttgaccaaaattttaaatcta---aatctgaaatgaatgaaacatttttgc-agCTTACCGTGCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAATGGCTTGTTCCTATTGCCGCCAATACAACAAA

upper sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 3'ss of exon 9
----------------------gtattaatactgtttcacacttcccataatgcttttgtgctgacaagatgaatttacca---tgtccagtgtta-----cttgaaatgttatt-tgtatccctgctcacctcactatatctgatttgttttcaccagCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAA
                       | ||  |     || | |          |  || |    ||  | | ||     || |     | || ||  |     | | | || ||  | |||       || |   || |     ||| |  | ||   ||||| ||  |||| ||||| |||||||||||||| ||||| ||||| |||||||| ||| ||||  | ||||| |||||
gtatttattacacattcggctcttctttgttgcactttaaaagcaaataggtatttattacttgggatgctggtcccactagtactttcattgagataacgcctaatattttgctctgtgcatgcacttaaaacaattctcttgactgatgtttcacagCTTACCATTCCACAAATCAAAGCTGAAATGGAGAAAACTTTGCATTGGCTTGTGCCTATTGCCGCCAACACAACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatgttatttgtatccctgctcacctcactatatctgatttgttttcaccagCTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAA
                                         tttgttttc  CT-rich tract
       ttatttgtat  TA-rich tract