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gtgttgttagtcgttactgcttctactttacaaaatctatcgatatattgaagaacacttataagaagaattttgtattgaactttgcagGGTGAGGCCGGTGAGACCTGCGGTTGTATCAGGGGCTTTGGAAGATGAGACAGAGAAGTTTACAGAACAGAATCACACATCACAAGAGTCACTTGAAAAT
species | Arabidopsis thaliana |
transcript | AT1G28100.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAG GGTGAGGCCGGTGAGACCTGCGGTT-TATCAGGGGCTTTGGAAGATGAGACEST: gi|86079751|gb|DR375508.1|DR375508
genomic: ACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAGgtgttgttag ... aactttgcagGGTGAGGCCGGTGAGACCTGCGGTTGTATCAGGGGCTTTGGAAGATGAGAC
EST: ACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAG GGTGAGGCCAGTGAGAC-TGCGGTTGTATCAGGGGCTTTGGAAGATGAGACEST: gi|86081816|gb|DR377575.1|DR377575
genomic: ACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAGgtgttgttag ... aactttgcagGGTGAGGCCGGTGAGACCTGCGGTTGTATCAGGGGCTTTGGAAGATGAGAC
EST: ACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTG--G --TGAGGCCAGTGAGAC-TGCGGTTGTATCAGGGGCTTTGGAAGATGAGAC
genomic: ACAATTTACAACTCAAACTTGCTCAAGTACTCATGCCATCTCCACTGCAGgtgttgttag ... aactttgcagGGTGAGGCCGGTGAGACCTGCGGTTGTATCAGGGGCTTTGGAAGATGAGAC
tctatcgatatattgaagaacacttataagaagaattttgtattgaactttgcagGGTGAGGCCGGTGAGACCTGCGGTTGTATCAGGGGCTTTGGAAGATGAGACAGAGAAGTTTACAGAACAGAATCACACATCACAAGAGTCACTTGAAAAT
ttataagaagaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttgttagtcgttactgcttctactttacaaaatctatcgatatattgaagaacacttataagaagaattttgtattgaactttgcagGGTGAGGCCGGTGAGACCTGCGGTTGTATCAGGGGCTTTGGAAGATGAGACAGAGAAGTTTACAGAACAGAATCACACATCACAAGAGTCACTTGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT