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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttgagcattttatactaaaaccatctgtctgtttatcttattgttgatctatgtcaagtacctcacctataacatctaatctccagctttggtcccttttctttggatatcactaaagctgcaaatattgagatctccagattgacctttatcatataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTCTACGCGCAATATCTCTCATGGCGCCTGTAATGGGATCAGAAATCACATGCT

Basic information

species Arabidopsis thaliana
transcript AT1G25490.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163982472|gb|ES184478.1|ES184478
EST:     TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAG                         GTATTGGACATGGTCAACAATCCGCACTACCTACACA
genomic: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttg ... atataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACA
EST: gi|164197672|gb|ES143454.1|ES143454
EST:     TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAG                         GTATTGGACATGGTCAACAATCCGCACTACCTACACA
genomic: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttg ... atataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACA
EST: gi|47830292|gb|CK119976.1|CK119976
EST:     TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAG                         GTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTCTA
genomic: TCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttg ... atataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcactaaagctgcaaatattgagatctccagattgacctttatcatataaacagGTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTCTACGCGCAATATCTCTCATGGCGCCTGTAATGGGATCAGAAATCACATGCT
                                       tttatcatataaaca  TA-rich tract