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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaatgtcttcctcgtatttttatcttctaatgcttagctcaagagactattttttgctaaaaaaaataattttcatgtgcagTCTCATGCTTCACAAATTCTTGGATTTAAATTCCAATACTATCAGAGACTAGAGGTGAATAGCCCTGTTCCAGTTGGGCTCTATAAGCTTACAGCCTTGC

Basic information

species Arabidopsis thaliana
transcript AT1G24706.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 6
--gtttggaatgtcttcctcg--tatttttatcttctaatgcttagc--tcaagagactattttttg-ctaaaaaaaataattttcatgtgcagTCTCATGCTTCACAAATTCTTGGATTTAAATTCCAATACTATCAGAGACTAGAGGTGAATAGCCCTGTTCCAGTTGGGCTCTATAAGCTTACAGCCTTGC
| | ||| ||| | ||| ||| || || | | | | ||| ||| |||||| || | | || | | | ||||||||||||||||||| |||||||||||||| || ||||| ||||| | | || || || || ||||||||| |||||||||||| |||||||||||||
gtggataaaataaaagcctaggccattcctatatt-tagtttacaacatttaagggacaatttttcatcttattattttatctcttttatgcagTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGC

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA05G34330.1 (Glycine max), 3'ss of exon 9
--gtttggaatgtcttcctcg--tatttttatcttctaatgcttagc--tcaagagactattttttg-ctaaaaaaaataattttcatgtgcagTCTCATGCTTCACAAATTCTTGGATTTAAATTCCAATACTATCAGAGACTAGAGGTGAATAGCCCTGTTCCAGTTGGGCTCTATAAGCTTACAGCCTTGC
| | ||| ||| | ||| ||| || || | | | | ||| ||| |||||| || | | || | | | ||||||||||||||||||| |||||||||||||| || ||||| ||||| | | || || || | ||||||||| |||||||||||| || ||||||||||
gtggataaaataaaagcctaggccattcctatatt-tacttttcgacatttaagggacaatttttcatcttatgattttatctcttttatgcagTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGGATGGAAGTCAACGGTCCTGTTCCATTTGGGCTCTATAGACTGACAGCCTTGC

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv01s0011g06120.t01 (Vitis vinifera), 3'ss of exon 9
------------------------------------------------gtttggaatgtcttcctc----------------gtatttttatcttctaatgc-ttagctcaagagactattttttgctaaaaaaaataattttca--tgtgcagTCTCATGCTTCACAAATTCTTGGATTTAAATTCCAATACTATCAGAGACTAGAGGTGAATAGCCCTGTTCCAGTTGGGCTCTATAAGCTTACAGCCTTGC
||| || | | || | || | | ||| | | | | | | |||| | || || | |||||| | |||||||||||||||||||| ||||| ||||||| |||||| |||||| | | || || |||| | ||||||| |||||||||| |||| ||||| ||||
gtatgaagttatgttgtcagtttccagtaccttgaagtgcctcttttcttttaatatatttctctttattcataaaaaaaaaatgttgtcagtttccagtaaactggtatatttgtttattgtatgtattgctaatttcttttcaacctttcagTCTCATGCTTCACAAATACTTGGTTTTAAATACCAATATTATCAGCGCATGGAAGTTAATAATCGTGTTCCACCTGGGCTCTATCAGCTGACAGCTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgcttagctcaagagactattttttgctaaaaaaaataattttcatgtgcagTCTCATGCTTCACAAATTCTTGGATTTAAATTCCAATACTATCAGAGACTAGAGGTGAATAGCCCTGTTCCAGTTGGGCTCTATAAGCTTACAGCCTTGC
                           tgctaaa  putative branch site (score: 2)
 ttttcat  putative PPT
 actattttttgctaaa  TA-rich tract