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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctcagcacttctatttcccagctcgcttacagtttccttggtagttctttactaatccaattaagtcgctcgacttcatacactgatcatattttttatatatcagGTTGTTGATGCGCTATGCAATGTCGTATCTGCAACGCCAGCGAAAGCAGCAGCAGCAGTTGTCCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G22770.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 12
gtaaacctcagcacttctatttcccagctcgcttacagtttccttggtagttctttactaatccaattaagtcgctcgacttcatacactgatcatattttttatatat-cagGTTGTTGATGCGCTATGCAATGTCGTATCTGCAACGCCAGCGAAAGCAGCAGCAGCAGTTGTCCTTCAG
         |     || ||||  |   |   ||  |   || |||    |  ||    ||   |  | |     ||   |         |||| |||     || |||  |||| ||||||||||||||||| |||||||| ||| | || || ||||||||  |||||||||| ||||||
------tgtattggatccatttgtcttttttttttta---tcattgtgcatgtttgtgcaacttacatgaaaatttc---tctgcgtgacgatcctatccaa-atgtatgtagGTGGTTGATGCGCTATGCAACGTCGTATCAGCATCACCGGCAAAAGCAGCTACAGCAGTTGTTCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatccaattaagtcgctcgacttcatacactgatcatattttttatatatcagGTTGTTGATGCGCTATGCAATGTCGTATCTGCAACGCCAGCGAAAGCAGCAGCAGCAGTTGTCCTTCAG
                                      tatttttt  CT-rich tract
                              actgatcatatttttt  TA-rich tract