1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtataatttcttttaacggctcatccaatccaatggactatacacaaaaacaaaatgagtaagttttgctctgttttttcttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAGCCATTGCCATTTGCCAGAAGTTGTGATCATGAAGAAAAATATCTCTCTC
species | Arabidopsis thaliana |
transcript | AT1G19660.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGAAATACACATGACAG CTCGCAGACGGGAGTG-TTTTAATACATAATTTATGTAAATAATAAAGAAGEST: gi|86081874|gb|DR377633.1|DR377633
genomic: GGAAATACACATGACAGgtataatttc ... cttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAG
EST: AGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGACAG CTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAGEST: gi|86080886|gb|DR376643.1|DR376643
genomic: AGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGACAGgtataatttc ... cttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAG
EST: AGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGACAG CTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAGEST: gi|86085098|gb|DR380857.1|DR380857
genomic: AGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGACAGgtataatttc ... cttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAG
EST: AGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGACAG CTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAGEST: gi|164076392|gb|ES125001.1|ES125001
genomic: AGCTTGGCAAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGACAGgtataatttc ... cttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAG
EST: AGGAAATACACATGACAG CTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAG
genomic: AGGAAATACACATGACAGgtataatttc ... cttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAG
ggactatacacaaaaacaaaatgagtaagttttgctctgttttttcttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAGCCATTGCCATTTGCCAGAAGTTGTGATCATGAAGAAAAATATCTCTCTC
tcttaat putative branch site (score: 3)
ttttgctctgtttttt CT-rich tract
tgttttttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatttcttttaacggctcatccaatccaatggactatacacaaaaacaaaatgagtaagttttgctctgttttttcttaatgcagCTCGCAGACGGGAGTGTTTTTAATACATAATTTATGTAAATAATAAAGAAGCCATTGCCATTTGCCAGAAGTTGTGATCATGAAGAAAAATATCTCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA