1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgaatttcttactactcctcttaacgtcttatattactgcttctttctgttgatcacattgttgaaaccttgtttcgttttggtcttaaaaagGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGGCTCATAAATGGTTAGATGCTGAGTTAGCTGCTGGTTCAACAAATAGCAA
species | Arabidopsis thaliana |
transcript | AT1G19270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAGGCTCAAAG GATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTCATGGEST: gi|116435622|gb|EG478214.1|EG478214
genomic: TGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAGGCTCAAAGgtgaatttct ... tcttaaaaagGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGG
EST: TGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAGGCTCAAAG GATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGG
genomic: TGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGATGAGGCTCAAAGgtgaatttct ... tcttaaaaagGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGG
gcttctttctgttgatcacattgttgaaaccttgtttcgttttggtcttaaaaagGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGGCTCATAAATGGTTAGATGCTGAGTTAGCTGCTGGTTCAACAAATAGCAA
tgttgat putative branch site (score: 4)
tcttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatttcttactactcctcttaacgtcttatattactgcttctttctgttgatcacattgttgaaaccttgtttcgttttggtcttaaaaagGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGATGGCTCATAAATGGTTAGATGCTGAGTTAGCTGCTGGTTCAACAAATAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT