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...atgtcatagattatcataaaaacataggttttagtctcacttcatgagcctttttggagttttgaaactgaagattcatgtggctgttgatatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGAAGTGGTCGTGTGGCTGGATGCATGGTGAATGAAGGAAAATTTGTCAAAG
species | Arabidopsis thaliana |
transcript | AT1G17220.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTATTGACGATGTGCGAAACGCAATGGAAGGACTTCTTGAGTCTGTTGAG GAACAAATCCCAATTGGCTCAGCANAAGTTCGAGCTACTTTCAGCAGTGGAEST: gi|116471513|gb|EG514105.1|EG514105
genomic: TTATTGACGATGTGCGAAACGCAATGGAAGGACTTCTTGAGTCTGTTGAGgttagcattg ... tatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGA
EST: TTATTGACGATGTGCGAAACGCAATGGAAGGACTTCTTGAGTCTGTTGAG GAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGAEST: gi|116424651|gb|EG467243.1|EG467243
genomic: TTATTGACGATGTGCGAAACGCAATGGAAGGACTTCTTGAGTCTGTTGAGgttagcattg ... tatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGA
EST: TTATTGACGATGTGCGAAACGCAATGGAAGGACTTCTTGAGTCTGTTGAG GAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGAEST: gi|125182653|gb|EL197958.1|EL197958
genomic: TTATTGACGATGTGCGAAACGCAATGGAAGGACTTCTTGAGTCTGTTGAGgttagcattg ... tatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGA
EST: AGTCTGTTGAG GAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGA
genomic: AGTCTGTTGAGgttagcattg ... tatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGA
gagcctttttggagttttgaaactgaagattcatgtggctgttgatatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGAAGTGGTCGTGTGGCTGGATGCATGGTGAATGAAGGAAAATTTGTCAAAG
tgttgat putative branch site (score: 4)
atatttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtcatagattatcataaaaacataggttttagtctcacttcatgagcctttttggagttttgaaactgaagattcatgtggctgttgatatttgatagGAACAAATCCCAATTGGCTCAGCAGAAGTTCGAGCTACTTTCAGCAGTGGAAGTGGTCGTGTGGCTGGATGCATGGTGAATGAAGGAAAATTTGTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - taaaaac
- - - - - - - - - - - - - ggtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaac