Sequence
atgc intronic sequence ATGC exonic sequencegtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G16710.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 3'ss of exon 9
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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------------gtaagaaattagtccagtattc-tttcaaaagaacaccaatcatttcaagcataaatcatacgtgaaactgttttttat----caaat---gtttggcagGCTGTCCTTTTGTTCCAGAAAATAGAAGGTGTAGAAGTGTGCCTATTTGGAATGTATGTTCAAGAATTTGGTGCAGAATGCTCCTACCCGAACCAGCGTC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 3'ss of exon 8
-----------------------gtaaga-atgatcgacgcacaccatcattgtatttgct---tcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgt--tcgtgctccacattt-----tatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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gtgagaaagtggtctgatcatttgaaatatgtgatcgcctcttgatgttagtagttctaagaaattctttccgtaatgaaagttttattaaataaatcaagaaaataaaatcctaattctctttaacatttccaaatattttgcagGCTATTCTTTTATTTCAGAAAATAGAAGGTGTGGAAGTATGCTTATTTGGCATGTATGTCCAAGAATATGGTGCAGAATGCAAATTCCCAAACCAACGTC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GRMZM2G139977_T02 (Zea mays), 3'ss of exon 2
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgc-tccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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---------------gtaagaattcattcttgtcatttgaag----catgaattgtagtcacaactcacacgtactaatttctgcaaccgtatatttatgaaatgttggacagGCTGTTCTCTTGTTCCAGAAAATAGAAGGTGTGGAAGTATGTCTATTTGGAATGTATGTTCAAGAATTTGGTGCTGAATGCTCTTTCCCGAACCAGCGTC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GRMZM2G470556_T01 (Zea mays), 3'ss of exon 8
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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---------------gtaagaattcattcttgtcatttgaagcatgaatc--gtagttacactcactaatttctgcaacactattttttatg----aaatgttg---gacagGCTGTTCTCTTGTTCCAGAGAATAGAAGGTGTGGAAGTATGTCTATTTGGCATGTATGTTCAAGAATTTGGTGCAGAATGCTCTTCCCCGAACCAGCGCC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 11
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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----------------------gtgatgagaa--agttgatttatcaatctgatcgtaatcgaatcattaatcatgaatattat--ttgatgcccttagctttctattccagGTAGTTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 9
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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-------------------gtgatgggaaagttgattttatccatccgattgtaatc-----aaatcattaatcatg--aatacttttgattcccttagctttctattccagGTAGTTTTGTTGTTTCAAAGGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGTCAATTTCCTAATCAGCGCC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 8
gtaagaatgatcgacgcacaccatcattgtatttgcttcatgtccacatttaatattttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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----gtatgcaggatgtatattaagttgatgttt-tttcat----atagttgaca-----aagacttaaattatgaactgaa---gattgt------ctttttcgtttccagGTAATTTTGTTGTTTCAGAAGATTGAAGGAGTAGAAGTATGCTTATTTGGGATGTATGTTCAAGAATTTGGATCAGAATGTCTATTCCCAAATCAACGTC
upper sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: PP1S193_70V6.1 (Physcomitrella patens), 3'ss of exon 10
-----------------gtaagaatgatcgacgca--caccatcattgtattt---gcttcatgtccac-atttaatattttcaggattcctctcttgtagtaatatcgttcgt--------gctccacattttatttat-cagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
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gtatattttgcttgtggtttagtgtggccaacaaagtttccaagcttgtctttcaaaactcatgttcacgatgtttttgctttgtggtttcaatgttaatataagcgtatttatagggacttgtttgctatttttgttattcagGTGGTATTGCTGTTTCAAAAGATCGAAGGTGTAGAAGTTTGTCTCTTCGGCATGTATGTCCAAGAGTTTGGGATGGAATGCTCTCTTCCAAATCAGCGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116434362|gb|EG476954.1|EG476954EST: AAATTTTTCGGGAGGATAATTTTCCGACAGAATTTCCATACAAGTCCAAG GTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGG
genomic: AAATTTTTCGGGAGGATAATTTTCCGACAGAATTTCCATACAAGTCCAAGgtaagaatga ... tatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaggattcctctcttgtagtaatatcgttcgtgctccacattttatttatcagGTGGTTCTGCTGTTCCAGAAGATAGAAGGTGTAGAAGTATGCTTGTTTGGGATGTATGTCCAAGAATTTGGATCCGAATGTTCAAATCCCAATCAACGCC
ttttattt CT-rich tract
acattttatttatca TA-rich tract