1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acacacacacacacacatacatacatgtgtaactttagtcttcatacactgtgccgaaaagccttcacctcatttgtcttttgttttttgtttgtgatagCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTTTTCAG
species | Arabidopsis thaliana |
transcript | AT1G16470.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGG CTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCEST: gi|125142131|gb|EL179632.1|EL179632
genomic: ATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGgtaagtacaa ... tttgtgatagCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGC
EST: ATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGG CTTTGAGGGAGAGATCTCAAGEST: gi|86082335|gb|DR378094.1|DR378094
genomic: ATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGgtaagtacaa ... tttgtgatagCTTTGAGGGAGAGATCTCAAG
EST: ATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGG CTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGC
genomic: ATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGgtaagtacaa ... tttgtgatagCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGC
acactgtgccgaaaagccttcacctcatttgtcttttgttttttgtttgtgatagCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTTTTCAG
tttgtcttttgttttt CT-rich tract
ttttgttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacacacacacacacatacatacatgtgtaactttagtcttcatacactgtgccgaaaagccttcacctcatttgtcttttgttttttgtttgtgatagCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
acacaca
- - - - - - - acataca
- - - - - - - - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccgaaaa