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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacccaaatttgtacagttatatataaacatagcatctggaatcatatttaagccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC

Basic information

species Arabidopsis thaliana
transcript AT1G16300.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 3'ss of exon 10
gtacccaaatttgtacagttatatataaacatagcat--ctggaatcatatttaagccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
         |  |   |   | | ||  || | || |  || || |  | |||  ||  ||||| ||||  ||  || | ||||||||||| || ||||| || || || |||||||| || || || ||||||||||| || |||||||||||||| |||||||| || || || || ||  
--------gtacgatgaaccaaaaatctaccttgcttttctagatttctgttttggc--tgactgttttgatt-ccttattagGCTGTTGGGAAAGTCCTCCCTGAGCTAAATGGAAAGCTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTGTCTGTTGTCGACTTGACCTGCCGGA

upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G104632_T01 (Zea mays), 3'ss of exon 10
gtacccaaatttgtacagttatatataaacatagcatctggaatcatatttaagccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
||| |  ||     | ||  | |   |    |||  | | || ||| ||||    | |     ||| |||| | |    |||||||||| || ||||| || || || ||||||||||| || || ||||||||||| || ||||||||||||||||||||||||||||| || || ||  
gtagctgaagcc--aaaggcacac-catgtttag--tttagactcaaattttgcacttactggtttcactt-tattgtcagGCTGTTGGAAAAGTCCTGCCTGAGCTGAATGGAAAACTCACTGGTATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGATTTGACATGCCGGA

upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G051004_T01 (Zea mays), 3'ss of exon 10
gtacccaaatttgtacagttatatataaacatagcatctggaatcatatttaagccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
||| |  ||     | ||  | |   |  | ||   | | || ||| ||||  ||  |||||  |||   | | |    |||||||||| || || || || || || |||||||| || || || ||||||||||| || |||||||||||||||||||||||||| || || || ||  
gtagctgaagcc--aaaggcacac-catgcgtat--tttagactcaaatttt-gcactgactgatttcactttgttgtcagGCTGTTGGAAAAGTTCTGCCTGAGCTGAATGGAAAGCTCACTGGCATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGACTTGACATGCCGGA

upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA16G09020.1 (Glycine max), 3'ss of exon 10
gtacccaa---atttgtacag-ttatatataaacatagcatctggaatcatatttaagccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
||||   |   ||    |||| || |||     | ||   || | | |  |||||  |    |  || |||  |    |||  |||||||||| || || ||||| || || ||||||||||| || || ||||| |||||||| || || || ||||| ||||| ||||| || ||||| || |
gtacaagatggatggacacagattttatgctttc-tattttcagtactggtatttgtgattaggtttgttttatgaaatca-cagGCTGTTGGGAAAGTTCTTCCAGAGCTAAATGGAAAACTCACTGGGATGGCATTCCGTGTTCCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGC

upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 3'ss of exon 10
gtacccaaatttgtacagttatatataaacatagcatctgg-aatcatatttaagccatgactttt-ttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
|||   | ||   |  | ||  | ||  |  ||| |||    ||   | |  |||   ||| |||   |  |||     |||||||||||| || |||||||| |||||||| ||||| || || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
gtatg-agatggatttaatt-cacatggaagtagaatcccataaagttgtacaaggtgtgattttgactgtttggtatcatagGCTGTTGGAAAAGTCCTTCCAGAACTCAACGGAAAGCTCACTGGAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGAC

upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: EFJ15779 (Selaginella moellendorffii), 3'ss of exon 7
gtacccaaatttgtacagttatatataaacatagcatctggaatcatatttaa-gccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
                               |    |   | | ||| |  || | ||  |  | |||  | || |    ||||||| || ||||| ||||| || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||| || || || || || || ||| 
----------------------------gtctcttttaatggaccatgtccaaagtcactaaatgttt--tcgttttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTCAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACGTGCCGAT

upper sequence: AT1G16300.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: EFJ32914 (Selaginella moellendorffii), 3'ss of exon 9
gtacccaaatttgtacagttatatataaacatagcatctg--gaatcatatttaa-gccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
                            || |  | | |   | | ||| |  || | ||  |  | |||  | || |    ||||||| || ||||| ||||| || || ||||| || || ||||||||||| |||||||||||||| ||||| ||||| || || || || || || ||| 
--------------------------gcacgtctcttttaatggaccatgtccaaagtcactaaatgttt--tcgttttctcagGCTGTCGGCAAGGTTCTTCCAGAGCTTAATGGCAAGCTCACAGGAATGGCGTTCCGTGTCCCAACTCCAAACGTCTCAGTCGTCGACTTGACATGCCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatagcatctggaatcatatttaagccatgacttttttacttgtctcaatagGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGAC
                                  cttttttacttgtctc  CT-rich tract
               aatcatatttaa  TA-rich tract