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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcaaactctagaaaaatgctcctaagccctaacttgtgtctgaatcttgttccttctcttattttcttcagGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTCCTAACCAGATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTGGCTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G15960.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 11
--------------------gtgatcaaactctagaaaaatgctcctaagccctaacttgt--gtctgaatcttgt---tccttctcttattttcttcagGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTCCTAACCAGATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTGGCTCAG
                     |  |   |  |||   |  ||  |    ||||  | || |  ||    | |||||   ||||| | ||  ||| | ||||| |||||||||||| | ||| |||||||| || | || ||  ||||  |||||||||| |||||||||||||| || |||||  | || ||||||||  
atacaatgtttgagatacatatcttttcatactaattatgtgtgctgtggcccatatttttctgttcttaacttgtgtatccttatattcatttttgcagGGCTTTCTTGATTTACGTCTACAACCATGGATCCGGAATTTTTTAACTCGATGCTTGGCAATAATCCCAAGTTTAATTGTTGCAATTATTGGTGGCTCGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcctaagccctaacttgtgtctgaatcttgttccttctcttattttcttcagGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTCCTAACCAGATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTGGCTCAG
          ccctaac  putative branch site (score: 2)
                            tcttgttccttctctt  putative PPT
                                          ttattttctt  TA-rich tract