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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaaaacaaattctgtttcttcttttaacatcttcaagattcttttctcttgtcaagcttttccaaattttggttaaaccaagattcttcctttgttataacacaagcacactaaaccttctctacttcttgaactttcttgcattgctgattttgcctttttgcagATCATAAATGTGTATAATCAGGAATATGAAAGCGCGGCTAGGTTCTGGCCAGATGTTCATGGTCGTATAATATCAGCATTGATCATCGCACAAATCCTTT

Basic information

species Arabidopsis thaliana
transcript AT1G11960.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124877361|gb|EH956798.1|EH956798
EST:     CTTTCATTATCATCTTCTTCGCATTGGCTTACCTTGTCTTTCGTCATCAG                         ATCATAAATGTGTATAATCAGG
genomic: CTTTCATTATCATCTTCTTCGCATTGGCTTACCTTGTCTTTCGTCATCAGgttagtaaaa ... ctttttgcagATCATAAATGTGTATAATCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaccttctctacttcttgaactttcttgcattgctgattttgcctttttgcagATCATAAATGTGTATAATCAGGAATATGAAAGCGCGGCTAGGTTCTGGCCAGATGTTCATGGTCGTATAATATCAGCATTGATCATCGCACAAATCCTTT
                                       ttttgcctttttgc  CT-rich tract
                                    tgatttt  TA-rich tract