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gtgctctttctcacaaactttagtgaacgaacaaacagttgctactgtattttgatgaagatgagaggaatgctcaagaatgaaatcgatgctgacctttttttgtgtgccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCTAGAATGCGAGCTTTAGGAGAGGAAC
species | Arabidopsis thaliana |
transcript | AT1G09430.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGATGTGGCAGCTTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAG GAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGEST: gi|86087110|gb|DR382869.1|DR382869
genomic: TGATGTGGCAGC-TACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGG
EST: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGYTAAGAGAAAAG GAAMCAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGAEST: gi|125270367|gb|EL284452.1|EL284452
genomic: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGA
EST: TGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAAGAAAAG GAAACAAGATTGAAAGCATCAAEST: gi|116442520|gb|EG485112.1|EG485112
genomic: TGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGA-GAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAA
EST: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAG GAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGAEST: gi|125003657|gb|EL075926.1|EL075926
genomic: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGA
EST: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAG GAAACAAGATTGAAAGCATACAAGAATGCACATTTACGTAAGGAGAGEST: gi|124786849|gb|EH876528.1|EH876528
genomic: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCAT-CAAGAATGCACATTTACGTAAGGAGAG
EST: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAG GAAACAAGATTGAAAGCATCAAEST: gi|116442521|gb|EG485113.1|EG485113
genomic: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAA
EST: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAG GAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGAEST: gi|86078164|gb|DR373921.1|DR373921
genomic: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGA
EST: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAG GAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGA
genomic: CTGATGTGGCAGCTACTTTCAACGGTATCATTCGAGCGCTAAGAGAAAAGgtgctctttc ... ccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGA
gaggaatgctcaagaatgaaatcgatgctgacctttttttgtgtgccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCTAGAATGCGAGCTTTAGGAGAGGAAC
tgctgac putative branch site (score: 2)
tttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctctttctcacaaactttagtgaacgaacaaacagttgctactgtattttgatgaagatgagaggaatgctcaagaatgaaatcgatgctgacctttttttgtgtgccatgagcagGAAACAAGATTGAAAGCATCAAGAATGCACATTTACGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCTAGAATGCGAGCTTTAGGAGAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA