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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatctctcctaattatttagcttaattcatttgaatctctctaaaacaagtagtttggacttttgtggagtttctactgccaattatgtaattgttgtaaccaagttgggaatagataatctaagacggcattctcctttttctgtgttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT

Basic information

species Arabidopsis thaliana
transcript AT1G09210.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124974075|gb|EL047659.1|EL047659
EST:     GAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGAT
genomic: GAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT
EST: gi|164004691|gb|ES155932.1|ES155932
EST:     GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGAT
genomic: GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT
EST: gi|164080378|gb|ES075330.1|ES075330
EST:     ATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGATGC
genomic: ATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGATGC
EST: gi|164200510|gb|ES171420.1|ES171420
EST:     AGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGATGC
genomic: AGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGATGC
EST: gi|116412926|gb|EG455518.1|EG455518
EST:     GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGAT
genomic: GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT
EST: gi|125145396|gb|EL180593.1|EL180593
EST:     ATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGATG
genomic: ATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGATG
EST: gi|86078431|gb|DR374188.1|DR374188
EST:     GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCAC-TGCGGAATCTGAT
genomic: GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT
EST: gi|116412928|gb|EG455520.1|EG455520
EST:     GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAG                         GAATCCAAGGACGCACCTGCGGAATCTGAT
genomic: GCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGgtaaatatct ... gttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagttgggaatagataatctaagacggcattctcctttttctgtgttgatacagGAATCCAAGGACGCACCTGCGGAATCTGAT
                                            tgttgat  putative branch site (score: 4)
                              ttctcctttttctgtg  CT-rich tract
         aatagataatctaa  TA-rich tract