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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatctccctcttttttttataatcgaaagtagtcgtcagtgataactctttttgaatcttccaagtgttggataaagctaagattcattttaacatttgtcttgttctctgtctatttttagCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAG

Basic information

species Arabidopsis thaliana
transcript AT1G06390.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124903228|gb|EH977308.1|EH977308
EST:     TCTACGCTGCACTGCG                         CTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGAC
genomic: TCTACGCTGCACTGCGgtcagtatct ... ctatttttagCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACG-C
EST: gi|124910915|gb|EH984995.1|EH984995
EST:     TTCACCAAGTCTACGCTGCACTGCG                         CTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCC
genomic: TTCACCAAGTCTACGCTGCACTGCGgtcagtatct ... ctatttttagCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggataaagctaagattcattttaacatttgtcttgttctctgtctatttttagCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAG
                    ttttaac  putative branch site (score: 2)
                                tcttgttctctgtcta  putative PPT
               attcattttaacattt  TA-rich tract