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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgtaggacagaagagagacacagatatatgcttatgttggtttataatgtcacatttctatggtctaacaatacactgcaattgatggtaaaacttgcagATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATT

Basic information

species Arabidopsis thaliana
transcript AT1G03190.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 3'ss of exon 9
cgtaggacagaagagagacacagata-tatgc-ttatgttggttta-taatg-tcacatttctatggtctaacaatac-actgcaattgatggtaaaacttgcagATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATT
       |  |   |  ||||  ||  | | | ||    ||  ||| |  ||  ||   ||  ||  || |  | |   | |   || |    |   || ||||||||||| || |||||||| ||||| ||||| ||||| |||||||| || ||  | | |||||| ||| | ||||| ||||||||||||||| | || || 
-----ttctaatttgtcacacgcatcctgtccatttccctgccttactggtgaccaagctttcatactccaggattgttaatatcatggtatttctcacctgcagATACAGTCGCCATGATAAACGGTCTAAACTGCCTGGGTGGATACTGTCACACTTACATGATGCGCACCTAAATCTGAGCACTGATATGGCTTTGCATATA

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G097605_T01 (Zea mays), 3'ss of exon 9
-cgtaggacagaagagagacacagatatatgcttatgttggtttataatgtcacatttctatggtctaacaatacactgcaa-ttgatggtaaaacttgcagATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATT
  ||           | | |   | ||      |||||    || | |  |  | | | |   |  | ||| | |   | || ||  |        || ||||||||| || |||||||| ||||||||  | ||||| |||||||| |||||| ||| |||||| ||| | ||||| ||||||||||||||| | || || 
gtgttcattttcttggtg-cgttgttaatgttctatgtgaagttgttaattttc-tatgtgaagcgtcacatttcttggtaaattcctttctttctttacagATACAGTCGGCATGATAAACGGTCCAAGTTGCCTGGGTGGATACTCTCGCATTTGCATGATGCGCACCTAAATCTGAGCACTGATATGGCTCTCCATATA

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 10
cgtaggacagaagagagacacagatatatgcttatgttggtttataatgtcacatttctatggt-ctaacaatacactgcaattgatggtaaaacttg--cagATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATT
   ||  | ||   |||| |       |   |  | || |   ||||| |||    ||| |  | || | |||||      || |       ||||||  ||| ||||| ||||||||||| || || ||| | ||||| ||||| || || ||| | |||||||||||| ||||| | |||||||| |||||| | || |||
---agccctgagacgagatatttcccaaatgtgttatttggagataatttcattcgtcttttttactcataatacttatgtatggtcaactgaacttgtgcagGTACAGTCGTCATGATAAACGCTCTAAATTGCCTGGGTGGATTCTGTCACATTTACGTGATGCACACCTGAATTTGAGCACTGACATGGCTTTGCATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtcacatttctatggtctaacaatacactgcaattgatggtaaaacttgcagATACAGCCGTCATGATAAGCGGTCCAAACTACCTGGTTGGATACTTTCGCATCTGCGTGATGCACACTTGAATCTAAGCACTGATATGGCTATTCACATT
        atttctat  TA-rich tract