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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttcttctctccaatcaaacttttactttcgaccttccaaagaaaccacagaaccttagatatagaatctgaaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTA

Basic information

species Arabidopsis thaliana
transcript AT1G02305.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02305.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os05g24550.4 (Oryza sativa), 3'ss of exon 11
-----------gtaagttcttcttctctccaatcaaacttttactttcgaccttccaaagaaaccacagaaccttagatatagaatctgaaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTA
           | || |   |    ||   ||   || | || | |      |        | | |   |   | |  | | |    ||| | |   |||||||||||||||||||||  || || ||||||||||||||||| ||| | | |||||| |||||| | || ||    | |||| | || |       | 
gtaagtccttggcaaatatataagttcaataagtgaaatgttgcataatttgtattttttgagctattaa---taatgtttggtcggtgatactggtagGATGGGTACTTCAAGATCATAAGGGGCACAAACGAATGTGGCATCGAAGAAGATGTTGTTGCTGGTATGCCCTCGACGAAGAACATGGTGAGGAACTATG

upper sequence: AT1G02305.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA19G41120.1 (Glycine max), 3'ss of exon 10
------------------------------------------------gtaagttcttcttctctccaatcaaacttttactttcgacctt----ccaaagaaaccacagaacct-tagat--atagaatctgaaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTA
                                                 |   ||          | |||  ||  || ||||     | |    || |||| |   |  | |   ||||   ||  |||||  || || |||||||| |||||||||||| | ||||| |||||||||||||| |||||| | | |||    |||||||| |||||   ||  ||| | || | ||   | |
gtatgtttcttgaattattcttcaacttgaatgcctgttacttaagatatggcttagctgatggactaatttaatcttaacttgaatgcctgttacctaagatatgtcttagctaatagactaatttaatctttaa-ttgcagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGGATGTAACTGCTGGTTTGCCTTCCACCAAAAACCTCGTCAGAGAGGTGA

upper sequence: AT1G02305.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA03G38520.1 (Glycine max), 3'ss of exon 10
gtaagttcttcttctctccaatcaaacttttactttcgaccttccaaagaaaccacagaaccttagata-tagaatctgaaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTA
||| |||  |    |      |||| |||  |     |    |  | | |  ||  ||    ||   || |  ||||| ||  |  |||||||| |||||||||||| | ||||| |||||||||||||| |||||| | | |||   ||||||||| |||||   ||  ||| | || | ||   | |
gtatgtttcttgaattattcttcaa-cttgaatgcctgttacttaagacatgccgtagctaattgattaatttaatctcaa--tcacagGATGGTTACTTCAAGATCCGAAGAGGGACAAACGAATGTGGGATTGAAGAGGATGTAACAGCTGGTTTGCCTTCCACCAAAAACCTCGTCAGAGAGGTGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124976185|gb|EL049618.1|EL049618
EST:     GATTATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGG
genomic: GATTATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGG
EST: gi|125200657|gb|EL215611.1|EL215611
EST:     CCGAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
genomic: CCGAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
EST: gi|124945424|gb|EL021431.1|EL021431
EST:     GCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
genomic: GCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
EST: gi|86079522|gb|DR375279.1|DR375279
EST:     TTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
genomic: TTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
EST: gi|163992796|gb|ES141477.1|ES141477
EST:     ATTATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGG
genomic: ATTATTGGTTGCTTGCAAATCAATGGAACCGAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGG
EST: gi|164116950|gb|ES043417.1|ES043417
EST:     TCAATGGAACCGAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTG
genomic: TCAATGGAACCGAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTG
EST: gi|86038005|gb|DR333760.1|DR333760
EST:     GAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
genomic: GAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
EST: gi|124922820|gb|EL001073.1|EL001073
EST:     GCTGGGGTGAT                         GATGGGTACTTCAAGATTCAGGAGAGGAACAAACGAATGTGGCATTGAACA
genomic: GCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGA-TCAGGAGAGGAACAAACGAATGTGGCATTGAACA
EST: gi|125269613|gb|EL283698.1|EL283698
EST:     GCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
genomic: GCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
EST: gi|163967727|gb|ES055432.1|ES055432
EST:     CGAAGCTGGGGTGAT                         GATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT
genomic: CGAAGCTGGGGTGATgtaagttctt ... aaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcgaccttccaaagaaaccacagaaccttagatatagaatctgaaaatttcagGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACATGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTA
                             ttagatata  TA-rich tract