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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgttttctccctaaaccctattcttactgagaaattgaaatttggttattacgactgggaaactgaatttggtgattacggatgttatatagGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGAATCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAAC

Basic information

species Arabidopsis thaliana
transcript AT5G66470.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164005701|gb|ES004523.1|ES004523
EST:     TCATCGGAGCG                         GATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGA
genomic: TCATCGGAGCGgtttgtttgt ... tgttatatagGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGA
EST: gi|124856265|gb|EH940702.1|EH940702
EST:     TTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCG                         GATATGTGGCG
genomic: TTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCGgtttgtttgt ... tgttatatagGATATGTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttggttattacgactgggaaactgaatttggtgattacggatgttatatagGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGAATCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAAC
                                            atgttatata  TA-rich tract