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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgctctttctctgttctttcatttgcaacattgttctgtggttttactgcatcctctgctctgctttgaggtcactcatcaccatgttttgctcacagATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATTGCTCTCTCTGGCCACGAGAATGTTGTTCAGTTTCACAATGCCTTTG

Basic information

species Arabidopsis thaliana
transcript AT5G66210.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66210.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA16G23870.1 (Glycine max), 3'ss of exon 3
--agtgctctttctctgttctttcatttgcaacattgttctgtggtt----ttactgcatcctctgctctgctttgaggtcactcatca-ccatgtttt------gctcacagATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATTGCTCTCTCTGGCCACGAGAATGTTGTTCAGTTTCACAATGCCTTTG
  | | |  ||  |    || |   |||||  |    |  | |  ||    | |  |  |  |    | |  |||   |  | | || |   ||| |||      | |  ||||||||||| |||||||| ||||||||||| ||||| |||||  ||||  | |  || ||  ||||||| |||||||| ||||||||  | ||||| ||||
gtatttccgttaatgccatcgtcgttttgctcctaaatcttataattcaattcatcgtgtttttgtttgtagtttttaggaattaattagttatgctttaaatttggtggcagATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTACTGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTG

upper sequence: AT5G66210.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G05440.1 (Glycine max), 3'ss of exon 1
---------------agtgctctttctctgttctttcatttgcaacattgttctgtggt---tttactgcatcctctgctctgctttgagg-tcactcatca-ccatgtttt------gctcacagATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATTGCTCTCTCTGGCCACGAGAATGTTGTTCAGTTTCACAATGCCTTTG
               | |||  |     |    |||  |    ||  || |  |||  |   || |  |  |  | |       |||  |  | | | || |    || |||      | |  ||||||||||| |||||||| ||||||||||| ||||| |||||  ||||  | |  || ||  | ||||| |||||||| ||||||||  | ||||| ||||
gtatttatttccgtcaatgccatcggcgttcgttttggtccttaatcttataatgttttcaattcatcgtgttttgtttgtaattttaggaattattaattagttgtgctttaaatttggtggcagATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTACCGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152035215|gb|BP847842.2|BP847842
EST:     ACAGACCCAATGGAGATCGCGTCGCCGTCAAAAGACTCGATAAGTCTAAG                         ATGGTTCTTC-TATTGCTGTGGAGGATGTCAAGCGTGAGGTTCAGATTCTT
genomic: ACAGACCCAATGGAGATCGCGTCGCCGTCAAAAGACTCGATAAGTCTAAGgtacactttt ... ttgctcacagATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactgcatcctctgctctgctttgaggtcactcatcaccatgttttgctcacagATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATTGCTCTCTCTGGCCACGAGAATGTTGTTCAGTTTCACAATGCCTTTG
                                           ttttgctc  CT-rich tract
                                        atgtttt  TA-rich tract