Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttctgatctattctatcatatcaccatgcatgtaccagctgctgcggttgttaatgaaaaatccttgcacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT5G66170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063025|gb|DR358782.1|DR358782
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063042|gb|DR358799.1|DR358799
EST:     AGCCGRGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063006|gb|DR358763.1|DR358763
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86087471|gb|DR383230.1|DR383230
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063036|gb|DR358793.1|DR358793
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|152037864|gb|BP800677.2|BP800677
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATGGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063026|gb|DR358783.1|DR358783
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063037|gb|DR358794.1|DR358794
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGATGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063032|gb|DR358789.1|DR358789
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAANATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063041|gb|DR358798.1|DR358798
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGATGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063021|gb|DR358778.1|DR358778
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86072845|gb|DR368602.1|DR368602
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063015|gb|DR358772.1|DR358772
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGATGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063023|gb|DR358780.1|DR358780
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063005|gb|DR358762.1|DR358762
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063010|gb|DR358767.1|DR358767
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063020|gb|DR358777.1|DR358777
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063044|gb|DR358801.1|DR358801
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86018800|gb|DR314546.1|DR314546
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGA
EST: gi|86063008|gb|DR358765.1|DR358765
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86018801|gb|DR314547.1|DR314547
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063039|gb|DR358796.1|DR358796
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063035|gb|DR358792.1|DR358792
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063038|gb|DR358795.1|DR358795
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTRG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063013|gb|DR358770.1|DR358770
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063048|gb|DR358805.1|DR358805
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063016|gb|DR358773.1|DR358773
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063017|gb|DR358774.1|DR358774
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063022|gb|DR358779.1|DR358779
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|301502023|gb|HO207563.1|HO207563
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063043|gb|DR358800.1|DR358800
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|47832061|gb|CK121745.1|CK121745
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063024|gb|DR358781.1|DR358781
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063027|gb|DR358784.1|DR358784
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063018|gb|DR358775.1|DR358775
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063031|gb|DR358788.1|DR358788
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGATGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063045|gb|DR358802.1|DR358802
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063009|gb|DR358766.1|DR358766
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063033|gb|DR358790.1|DR358790
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGATGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063046|gb|DR358803.1|DR358803
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063014|gb|DR358771.1|DR358771
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063040|gb|DR358797.1|DR358797
EST:     AGCCRAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTRG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063034|gb|DR358791.1|DR358791
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
EST: gi|86063019|gb|DR358776.1|DR358776
EST:     AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAG                         GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA
genomic: AGCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGgtgagcttct ... cacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatgcatgtaccagctgctgcggttgttaatgaaaaatccttgcacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG
                          tgttaat  putative branch site (score: 3)
                                       tccttgc  putative PPT
                         ttgttaatgaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcttctgatctattctatcatatcaccatgcatgtaccagctgctgcggttgttaatgaaaaatccttgcacatggcagGACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT