1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatttaggccaatggtttttgtttaaaaaaatttcagagcacatacaatactcaagttttttagagtttggtcttacataatttgttgataaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTCTACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAAC
species | Arabidopsis thaliana |
transcript | AT5G66120.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCEST: gi|116421947|gb|EG464539.1|EG464539
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCEST: gi|116450338|gb|EG492930.1|EG492930
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCEST: gi|116450349|gb|EG492941.1|EG492941
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCEST: gi|116472855|gb|EG515447.1|EG515447
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG GCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCEST: gi|164024535|gb|ES158352.1|ES158352
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCC
EST: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAG GCATGTTCACGGAAAGAGAGTGCTTGTGG
genomic: CCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTTCAAAGgtttcatctt ... aaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGG
caatactcaagttttttagagtttggtcttacataatttgttgataaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTCTACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAAC
ataatttgttgataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttaggccaatggtttttgtttaaaaaaatttcagagcacatacaatactcaagttttttagagtttggtcttacataatttgttgataaatgtttagGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTCTACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - gtttttg
- - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - -catacaa
- - - - - - - - - - - - - - - - - - - - - - - - -actcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataat