1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgttcttacttttaagggaatctacagaaccggctgaaaagtgataaatcatttaaaagtgttttaaaataatgattattggtatgttcaaaaaaatcagATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGAACAAGAACTTGGAAATA
species | Arabidopsis thaliana |
transcript | AT5G65640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTAATGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAG ATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTTEST: gi|47828092|gb|CK117776.1|CK117776
genomic: TTAACGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAGgtaaattaca ... aaaaaatcagATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTT
EST: TTAACGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAG ATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTTEST: gi|86076319|gb|DR372076.1|DR372076
genomic: TTAACGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAGgtaaattaca ... aaaaaatcagATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTT
EST: ACGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAG ATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTT
genomic: ACGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAGgtaaattaca ... aaaaaatcagATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTT
aaatcatttaaaagtgttttaaaataatgattattggtatgttcaaaaaaatcagATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGAACAAGAACTTGGAAATA
ttttaaaataatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcttacttttaagggaatctacagaaccggctgaaaagtgataaatcatttaaaagtgttttaaaataatgattattggtatgttcaaaaaaatcagATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGAACAAGAACTTGGAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - -acagaac
- - - - - - - - - - - - - - - - -ctgaaaa
- - - - - - - - - - - - - - - - - - - - - - taaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa