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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgcaactttttcgttttctttgatttttgtttatagatatattgaattatgtgaatcaatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAGAGAAACCATTTGGGATCGGTGTTGTTCTTGCGTTTCCTCATGATTTGA

Basic information

species Arabidopsis thaliana
transcript AT5G64250.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453508|gb|EG496100.1|EG496100
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453507|gb|EG496099.1|EG496099
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453517|gb|EG496109.1|EG496109
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453516|gb|EG496108.1|EG496108
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039417|gb|DR335172.1|DR335172
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453501|gb|EG496093.1|EG496093
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453499|gb|EG496091.1|EG496091
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039418|gb|DR335173.1|DR335173
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039416|gb|DR335171.1|DR335171
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039415|gb|DR335170.1|DR335170
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTSCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039419|gb|DR335174.1|DR335174
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453500|gb|EG496092.1|EG496092
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453502|gb|EG496094.1|EG496094
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|125240925|gb|EL255010.1|EL255010
EST:     ATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: ATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039413|gb|DR335168.1|DR335168
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039414|gb|DR335169.1|DR335169
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAATGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453497|gb|EG496089.1|EG496089
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|116453503|gb|EG496095.1|EG496095
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
EST: gi|86039420|gb|DR335175.1|DR335175
EST:     CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGG                         GAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA
genomic: CCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgca ... aatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttctttgatttttgtttatagatatattgaattatgtgaatcaatgaatcagGAGTGTCCTGATTACTTGAGAGAGCTTATAAGAAAGACAAAGACATTGACAGAGAAACCATTTGGGATCGGTGTTGTTCTTGCGTTTCCTCATGATTTGA
     ctttgat  putative branch site (score: 5)
      tttgatttttgtttat  TA-rich tract