1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgcgcttcattgatgaaccctcgagtctgcttttgttatttgttcatgaggtttgcgtattttcgtttaagtaatgttgtttattatatactcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGAAAGAGCAAGGAAACCTCACCAACGAGGCAGAGAAGTCAATGCCAT
species | Arabidopsis thaliana |
transcript | AT5G64130.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTCCTCCTG CATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATEST: gi|164059669|gb|ES144784.1|ES144784
genomic: CTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGAT
EST: GAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTG CATTTTTTGGTTTTGGTGGCGTTGAGACATCATCEST: gi|164147607|gb|EL986898.1|EL986898
genomic: GAGAGCCACACCAATCCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTT-GGTTTTGGTGGCGTTGAGACATCATC
EST: CCTCCTTTTTCTTCTTCTTCTTCCTCCTG CA-TTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAAGGA
genomic: CCTCCTTTTTCTTCTTCTTCTTCCTCCTGgtgagtctaa ... actcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGA-GGA
catgaggtttgcgtattttcgtttaagtaatgttgtttattatatactcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGAAAGAGCAAGGAAACCTCACCAACGAGGCAGAGAAGTCAATGCCAT
tttaagtaatgttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcgcttcattgatgaaccctcgagtctgcttttgttatttgttcatgaggtttgcgtattttcgtttaagtaatgttgtttattatatactcgtgcagCATTTTTGGTTTTGGTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGAAAGAGCAAGGAAACCTCACCAACGAGGCAGAGAAGTCAATGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT