1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcactctcttttctttcactctctgttttgttctttatcgcctgagaattgatgtggatttttcaaatttcagttaatcttagctaattgacttgaaattcaatgaaaagattcaatttttggtttaattaagcaagttgtgagatagatgaacgaatttgttgaccaattgcgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTCCCAAGTTGATAGTTTGAAGTCACGCCCTCGCATTGACTTCTCTTCTAT
species | Arabidopsis thaliana |
transcript | AT5G63890.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTEST: gi|86068846|gb|DR364603.1|DR364603
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
EST: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTEST: gi|86068847|gb|DR364604.1|DR364604
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
EST: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTEST: gi|86068843|gb|DR364600.1|DR364600
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
EST: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTEST: gi|86068841|gb|DR364598.1|DR364598
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
EST: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGCTCTTEST: gi|86068845|gb|DR364602.1|DR364602
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
EST: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTEST: gi|86068842|gb|DR364599.1|DR364599
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
EST: GCTTCTCTCNTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAG GATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
genomic: GCTTCTCTCGTCCCCACGTATCTCGATTTCAACTCACGCTCCTCGGAAAGgtcactctct ... cgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTT
attaagcaagttgtgagatagatgaacgaatttgttgaccaattgcgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTCCCAAGTTGATAGTTTGAAGTCACGCCCTCGCATTGACTTCTCTTCTAT
tgttgac putative branch site (score: 3)
aatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactctcttttctttcactctctgttttgttctttatcgcctgagaattgatgtggatttttcaaatttcagttaatcttagctaattgacttgaaattcaatgaaaagattcaatttttggtttaattaagcaagttgtgagatagatgaacgaatttgttgaccaattgcgttttacagGATACGTTTGTTGCTCTATGAAGTCTTATAGATTATCTGAACTTAGTTCTTCCCAAGTTGATAGTTTGAAGTCACGCCCTCGCATTGACTTCTCTTCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG