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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgctgaaatttgaaaactttgtctatgtttcgattgcttgatactcttgtttcacatgttcatactctggaattgattatagattagtgtttttacagTTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGCTCTCACTAACGACTGGGTACATGGGCTTATGTCGTGTTTCGAATGGTC

Basic information

species Arabidopsis thaliana
transcript AT5G63870.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073151|gb|DR368908.1|DR368908
EST:     GTCCAAGATCCAAGCTTTGGAATTTTGTAAATTGTCTCCACTCTTAGCCG                         TTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAG
genomic: GTCCAAGATCCAAGCTTTGGAATTTTGTAAATTGTCTCCACTCTTAGCCGgtgagtctca ... gtttttacagTTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgtttcacatgttcatactctggaattgattatagattagtgtttttacagTTTTAATGGAAACTGTTCCACCATCTCCCATTACATGGCCAGATGGGGGAGCTCTCACTAACGACTGGGTACATGGGCTTATGTCGTGTTTCGAATGGTC
                           aattgat  putative branch site (score: 4)
                                            tgttttt  putative PPT
                           aattgattatagatta  TA-rich tract