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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtacgtagttcaagtttgcttactgatgcttaagaacttgaatgtaatctgaacagaaacgaattgggttcatgaacttgtgtagGTACACTCCAGGACAGTCCCCTCTTCCTTCAGAAACACAGTCTGCAGAGTTTTATAAAACAGCATCATCGATGCTCCGTGGTGCAGGTTATGAACATTAT

Basic information

species Arabidopsis thaliana
transcript AT5G63290.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124722973|gb|EH814375.1|EH814375
EST:     ATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAATTT                         GTACACTCCAGGACAGTCCCCTCTTCCTTCAGAAACACAGTCTGCAGAGT
genomic: ATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAATTTgtaagtgtac ... acttgtgtagGTACACTCCAGGACAGTCCCCTCTTCCTTCAGAAACACAGTCTGCAGAGT
EST: gi|124710245|gb|EH801647.1|EH801647
EST:     GTTTCTGTATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAATTT                         GTACACTCCAGGACAGT
genomic: GTTTCTGTATATGATCTGCAAGTCGAACAAGGCACAAAGTTTGGAAATTTgtaagtgtac ... acttgtgtagGTACACTCCAGGACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaacttgaatgtaatctgaacagaaacgaattgggttcatgaacttgtgtagGTACACTCCAGGACAGTCCCCTCTTCCTTCAGAAACACAGTCTGCAGAGTTTTATAAAACAGCATCATCGATGCTCCGTGGTGCAGGTTATGAACATTAT
          aatgtaat  TA-rich tract