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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgtttatatacaaacgttcgagtcacgttacatagatttccacaaataaaaacaaacaaatattatttacgaattttaatttgagatggtgataccatactattgttgtttctttacggttcagtttgaattagtttggtccgttttatcaaaatttaaatacttctttacaatttatttttgtttatgaagGTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTGCCTTGGTGC

Basic information

species Arabidopsis thaliana
transcript AT5G60660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502427|gb|HO207967.1|HO207967
EST:     TTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCG                         GTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAG
genomic: TTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCGgtaagtatgt ... gtttatgaagGTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAG
EST: gi|19876401|gb|AU237232.1|AU237232
EST:     TTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCG                         GTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAG
genomic: TTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCGgtaagtatgt ... gtttatgaagGTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAG
EST: gi|301502396|gb|HO207936.1|HO207936
EST:     TTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCG                         GTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAG
genomic: TTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCGgtaagtatgt ... gtttatgaagGTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtccgttttatcaaaatttaaatacttctttacaatttatttttgtttatgaagGTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTGCCTTGGTGC
                                        tttttgttt  CT-rich tract
      ttttatcaaaatttaa  TA-rich tract