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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcccttggaatctctctccttaccaaaatcaatcttgtgattgttatgttcttctctaaatccgatttttgtttgattcagATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGAAGAATATATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCT

Basic information

species Arabidopsis thaliana
transcript AT5G59300.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125048509|gb|EL120778.1|EL120778
EST:     ATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTCAAAG                         ATCTCTGTAAGCATCCT
genomic: ATCATCCATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTCAAAGgcaagccctt ... tttgattcagATCTCTGTAAGCATCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaatcttgtgattgttatgttcttctctaaatccgatttttgtttgattcagATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGAAGAATATATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCT
                                       tttttgttt  CT-rich tract
                                      atttttgtttgatt  TA-rich tract