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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccgtgaattataatggcttgttggctttaggaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgtttcagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G58870.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA14G37090.1 (Glycine max), 3'ss of exon 2
-------gtaagac------cgtgaattataa--tggcttgttggctttaggaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgtttcagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAG
        |||| |      | |  |||||||  |  ||||   |   | |   |||||   ||  |  | ||  | | ||  ||   || |  | ||||   |||||||   |||| ||   |||  ||||||||||||||||||| ||||| |||||||  ||||| |||
cagtagtttaaggcattcaacattcattataaatttccttgacagtcgtggttgacact---atatatcatgtaacatgttgactccattctcatatttg---cagATAGCCTTGTTTTATTGTGCTCTGCTTGCAGGGCTTCTCCATCGATTCCCTGTTAGTTTTTCTCAG

upper sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA0028S00210.2 (Glycine max), 3'ss of exon 1
gtaagaccgtgaattataatggcttgttggctttaggaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgttt---------cagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAG
    |    | ||||    ||| |   |     |||    ||    |||   | | |   | |    | | |  |  ||  ||  ||          |||||||   |||| ||   ||| |||||||||||||||||||| ||||| ||||| | |||||| |||
aattggttataaatttccttggttctctcaaggtagattccataatgatatgacatgacccattacatatggcatactgacttcattctcatattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAG

upper sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 3'ss of exon 1
----------gtaagaccgtgaattat--aatggcttgttggctttaggaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgtttcagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAG
          ||    | | | | | |  ||      | |   | | |   |  | |  |          |  | ||| |||||    |  | ||||   ||||| |   |||||||  |||| ||||||||||| |||||||||||||||||||| | |||||| |||
gaaggaaattgtttatctggggagttttgaacaatcagctctatctggatcatgcatcaaccttgcccactgttgcttatcttgacactcctctttg---cagATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacacttagattgaaaaggtttcttcttttcttgttttttgtttttgtttcagATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAG
                     tttcttcttttcttgt  CT-rich tract
                                    ttttttgtttttgttt  TA-rich tract