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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacttaataatcaaaagctcgaatttttaatgttcttccaatcattgaaatataatccgagattaaagtttttaaatttgatcttgattggtgtgtaaagTCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGATTCTGATGACTGGCAAGGTGATTTCTTCCCTGAAATCCCCAAGATTAAGT

Basic information

species Arabidopsis thaliana
transcript AT5G57655.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055233|gb|DR350990.1|DR350990
EST:     TTGAGTTTTTTATGCTCCTTCTCTGCTTCATCGCAGCGTCATCTCTAGTG                         TCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGAT
genomic: TTGAGTTTTTTATGCTCCTTCTCTGCTTCATCGCAGCGTCATCTCTAGTGgtaagactta ... gtgtgtaaagTCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGAT
EST: gi|116424348|gb|EG466940.1|EG466940
EST:     TTGAGTTTTTTATGCTCCTTCTCTGCTTCATCGCAGCGTCATCTCTAGTG                         TCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGAT
genomic: TTGAGTTTTTTATGCTCCTTCTCTGCTTCATCGCAGCGTCATCTCTAGTGgtaagactta ... gtgtgtaaagTCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGAT
EST: gi|301501388|gb|HO206928.1|HO206928
EST:     TTGAGTTTTTTATGCTCCTTCTCTGCTTCATCGCAGCGTCATCTCTAGTG                         TCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGAT
genomic: TTGAGTTTTTTATGCTCCTTCTCTGCTTCATCGCAGCGTCATCTCTAGTGgtaagactta ... gtgtgtaaagTCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatataatccgagattaaagtttttaaatttgatcttgattggtgtgtaaagTCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGGCAAGTGTAGTGATTCTGATGACTGGCAAGGTGATTTCTTCCCTGAAATCCCCAAGATTAAGT
                                    tcttgat  putative branch site (score: 4)
                attaaagtttttaaat  TA-rich tract