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gtttgttttctgctcattgaaagatctgcttcgttttgcttaagatcttcaccataatcactccgatttgatatttctttttctcgtttatgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGTGATTGTTCAGA
species | Arabidopsis thaliana |
transcript | AT5G56360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGCTCGTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAG ATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAAEST: gi|152034153|gb|BP868841.2|BP868841
genomic: ATCAAGCTCGTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAGgtttgttttc ... tgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAA
EST: ATCAAGCTCGTCTCCACCGAAGGATCGGTTTCTCGGCATTTCTCCTCAAG ATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAAEST: gi|86068203|gb|DR363960.1|DR363960
genomic: ATCAAGCTCGTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAGgtttgttttc ... tgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAA
EST: ATCAAGCTCGTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAG ATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAAEST: gi|164085512|gb|ES039164.1|ES039164
genomic: ATCAAGCTCGTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAGgtttgttttc ... tgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAA
EST: GTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAG ATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAA
genomic: GTCTCCACCGAACGATCCGTTTCTCGGCATTTCTCCTCAAGgtttgttttc ... tgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAA
tcttcaccataatcactccgatttgatatttctttttctcgtttatgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGTGATTGTTCAGA
atttgat putative branch site (score: 5)
tttctttttctcgttt CT-rich tract
atttgatatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttctgctcattgaaagatctgcttcgttttgcttaagatcttcaccataatcactccgatttgatatttctttttctcgtttatgtgtgttagATGAGAAGTATTACAAGTCATCTTCAGAGATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGTGATTGTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT