Sequence
atgc intronic sequence ATGC exonic sequence...tacttaaactttcatctgtagtaagatccgtgattgttgtttctgagtcttctcaatccagctttaaactgatgctattgttttgttttgatgactatagATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGAGAGTAAAGACAAGTTCTTTAAATCTCAGGGAAGAAGGAATTGGTGTTTAAGATT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G55910.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124767524|gb|EH857654.1|EH857654EST: TCTTTATCGCTCAAAAATCTTCACTTTCAG ATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGAGAGTA
genomic: TCTTTATCGCTCAAAAATCTTCACTTTCAGgtaacgattt ... atgactatagATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGAGAGTA
EST:
gi|125081053|gb|EL142426.1|EL142426EST: TCGAAAAGGGTATCTCGTGATCTTTATCGCTCAAAAATCTTCACTTTCAG ATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGA
genomic: TCGAAAAGGGTATCTCGTGATCTTTATCGCTCAAAAATCTTCACTTTCAGgtaacgattt ... atgactatagATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtcttctcaatccagctttaaactgatgctattgttttgttttgatgactatagATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGAGAGTAAAGACAAGTTCTTTAAATCTCAGGGAAGAAGGAATTGGTGTTTAAGATT
tattgttttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacttaaactttcatctgtagtaagatccgtgattgttgtttctgagtcttctcaatccagctttaaactgatgctattgttttgttttgatgactatagATCAGGCCACTCGTTGATGGAATCTGTGACAGTATTGATTACTAGAGAGTAAAGACAAGTTCTTTAAATCTCAGGGAAGAAGGAATTGGTGTTTAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- cttaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactga