Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttacttgactgtttatcaaaatcgagatgaacatagtcttttgcttatcatgtagaagattgattaagtattgttctttgcaatataaatcttcattttttatggttagtgaatacttggtgtttttgtttggtggtttcagGCTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGTTATGGATTCATTGAGTTCGTCAGCCACTCTGTAGCAGAGCGGGTTTTGC

Basic information

species Arabidopsis thaliana
transcript AT5G54900.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054572|gb|DR350329.1|DR350329
EST:     AATGGATGGACGAGAACTACATCATGAGCGTCTTTGCTCAGTCTGGTGAG                         GNTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGNACAATCTGAAGGT
genomic: AATGGATGGACGAGAACTACATCATGAGCGTCTTTGCTCAGTCTGGCGAGgtaattttac ... gtggtttcagGCTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGT
EST: gi|163973749|gb|ES138649.1|ES138649
EST:     TCATGAGCGTCTTTGCTCAGTCTGGCGAG                         GCTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGT
genomic: TCATGAGCGTCTTTGCTCAGTCTGGCGAGgtaattttac ... gtggtttcagGCTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcttcattttttatggttagtgaatacttggtgtttttgtttggtggtttcagGCTACATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGTTATGGATTCATTGAGTTCGTCAGCCACTCTGTAGCAGAGCGGGTTTTGC
       attttttatggtta  TA-rich tract