1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtggatactcttagaagatgatgcttcttaattcttacacaaagttttggatttttttttttttttttgtattctaagtttgattatgttgtttatgaagGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACTCCATATCGTGTTACATGGACTTGGTACTTCATTTCACGACAGCATACTG
species | Arabidopsis thaliana |
transcript | AT5G54870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAG GCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACTEST: gi|301502090|gb|HO207630.1|HO207630
genomic: TTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAGgtgaaattca ... gtttatgaagGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACT
EST: TTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAG GCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACTEST: gi|86073102|gb|DR368859.1|DR368859
genomic: TTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAGgtgaaattca ... gtttatgaagGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACT
EST: TTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAG GCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACT
genomic: TTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAGgtgaaattca ... gtttatgaagGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACT
tttggatttttttttttttttttgtattctaagtttgattatgttgtttatgaagGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACTCCATATCGTGTTACATGGACTTGGTACTTCATTTCACGACAGCATACTG
gtttgat putative branch site (score: 5)
attttttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatactcttagaagatgatgcttcttaattcttacacaaagttttggatttttttttttttttttgtattctaagtttgattatgttgtttatgaagGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACTCCATATCGTGTTACATGGACTTGGTACTTCATTTCACGACAGCATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -ctcttag
- - - - - - - aagatga
- - - - - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - - -gttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtttga