1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctattcaacggtgttagttttttaagtctttttgatttttgtgccttcaagttgtgtgtggattctcatggtttgctgtttttgtttgtgtagtatacagAGGCTGGAGCTGGGGAAGAAAAGGATTGTCTATGGAGGGAGACGTCGGAATAGGTTTGGTATGCCAGAATACTATGGATGGGAAGGCGAGTAATGGAAAT
species | Arabidopsis thaliana |
transcript | AT5G53120.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAGEST: gi|86043711|gb|DR339466.1|DR339466
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAGEST: gi|86043709|gb|DR339464.1|DR339464
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAGEST: gi|86043705|gb|DR339460.1|DR339460
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAGEST: gi|86043706|gb|DR339461.1|DR339461
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAGEST: gi|86043707|gb|DR339462.1|DR339462
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
EST: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGACCAGTATACAG
genomic: ATCAATCACCGTTTAGCTTTCTTCCCATACGTCTCTCCGTTTACGA-C------CAGgtaggtctct ... tagt
ttcaagttgtgtgtggattctcatggtttgctgtttttgtttgtgtagtatacagAGGCTGGAGCTGGGGAAGAAAAGGATTGTCTATGGAGGGAGACGTCGGAATAGGTTTGGTATGCCAGAATACTATGGATGGGAAGGCGAGTAATGGAAAT
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattcaacggtgttagttttttaagtctttttgatttttgtgccttcaagttgtgtgtggattctcatggtttgctgtttttgtttgtgtagtatacagAGGCTGGAGCTGGGGAAGAAAAGGATTGTCTATGGAGGGAGACGTCGGAATAGGTTTGGTATGCCAGAATACTATGGATGGGAAGGCGAGTAATGGAAAT
- attcaac
- - - - - - - - - - - - - - - - - - - - - -ccttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgc