Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttccaatggttttagaatgatggcttatttgttctgattttgtcatttacaacatgttcttcaccatggagttgtaatttgttctttttgcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCT

Basic information

species Arabidopsis thaliana
transcript AT5G52840.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52840.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G018941_T01 (Zea mays), 3'ss of exon 1
cttccaatggttttagaatgatggcttatttgttc---tgattttgtcatttacaacatgttcttcaccatggagt--tgtaatttgttctttttgcatatg-cagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCT
       | |  ||  |||    || ||| | |     ||  ||||  |  |    ||     ||||   ||   |  ||| |||   | | |  |   ||| |||| |||||||| |||||||| || ||||| ||||| ||||| ||||||||  | ||  | || ||||| |||||||||||||||||||| |||| | ||||
------ctaggctttcaattccagcatatatatctgcgtgtatttgatagctgatgcaaagctttcagtttgttttaatgtgattctgtgtctgagtgaatggcagAATGGGATCCATGGGGTGTTCCCGATGACTACGAATGTGAGGTGATTGAAGACGACACCCCAATTCCTAAGCATGTTCCTCAGCACCGGCCTGTTGCTCT

upper sequence: AT5G52840.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G051613_T02 (Zea mays), 3'ss of exon 1
--cttccaatggttttagaatgatggcttatttgttctgattttgtcatttacaacatgttcttca--ccatggagttgtaatttgttctttttgcatatg-cagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCT
   |||||  |    ||  ||| | || | |    | || |||  | ||  | |   ||| |||||   | |     ||| |||  || |||      ||| |||| |||||||| |||||||| || ||||| ||||| ||||| ||||||||  | ||  | || ||||| |||||||||||||||||||| || | | ||||
caattccagcg----taatatgtttgcatgtactatttg-tttgctgatgcaaattttgtgcttcagttcgttttaatgtgattctttgtttgaatgaatggcagAATGGGATCCGTGGGGTGTCCCTGATGACTACGAATGTGAGGTGATTGAAGACGACACCCCAATTCCTAAGCATGTTCCTCAGCACCGGCCCGTTGCTCT

upper sequence: AT5G52840.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0050g01490.t01 (Vitis vinifera), 3'ss of exon 1
cttccaatggttttagaatgatggcttatttgttctgattttgtcatt-tacaacatgttcttcaccat-ggagttgtaatt--tgttctttttgcat----atgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCT
       | || || |||  ||   |   |||||||  | ||   |    |  | |  ||       |   || |||| | |  |||  |||||  ||    |||||||||||||||| |||||||| || || || || || || || || || ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||
------ctagtgttggaaccata--tggcttgttcttgtcttaaaagaacatcaaacattaaaagtgaccagatttgttaataatgtcttttttatattggaatgcagAGTGGGATCCATGGGGTGTTCCCGACGACTATGAATGCGAGGTTATCGAGAATGATGCTCCAATTCCAAAGCATGTTCCTCAGCATCGACCAGGTCCTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055996|gb|DR351753.1|DR351753
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055985|gb|DR351742.1|DR351742
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055970|gb|DR351727.1|DR351727
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055981|gb|DR351738.1|DR351738
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|164090139|gb|EL981228.1|EL981228
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGA
EST: gi|164076031|gb|ES098754.1|ES098754
EST:     CTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATT
genomic: CTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATT
EST: gi|86056010|gb|DR351767.1|DR351767
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055999|gb|DR351756.1|DR351756
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|124899942|gb|EH974560.1|EH974560
EST:     CGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: CGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|124948621|gb|EL024354.1|EL024354
EST:     ATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: ATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056008|gb|DR351765.1|DR351765
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|125258894|gb|EL272979.1|EL272979
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGG
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGG
EST: gi|86056011|gb|DR351768.1|DR351768
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTAC
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTAC
EST: gi|86055971|gb|DR351728.1|DR351728
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGGATCCTTGGGGTGTACCAGATGATTACGAGTTGTGAAGTGATTGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGG-ATCCTTGGGGTGTACCAGATGATTACGAGT-GTGAAGTGATTGA
EST: gi|47828585|gb|CK118269.1|CK118269
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056001|gb|DR351758.1|DR351758
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|124879341|gb|EH958778.1|EH958778
EST:     CGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: CGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055972|gb|DR351729.1|DR351729
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTCGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|116398382|gb|EG440974.1|EG440974
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAGTGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|164227043|gb|ES009241.1|ES009241
EST:     ACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: ACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055980|gb|DR351737.1|DR351737
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056005|gb|DR351762.1|DR351762
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055983|gb|DR351740.1|DR351740
EST:     CTTATCGAAGAGGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCA
genomic: CTTATCGAAGAGG-CTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCA
EST: gi|86056006|gb|DR351763.1|DR351763
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTCGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056014|gb|DR351771.1|DR351771
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|116398383|gb|EG440975.1|EG440975
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAGTGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055975|gb|DR351732.1|DR351732
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055989|gb|DR351746.1|DR351746
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056002|gb|DR351759.1|DR351759
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|47830466|gb|CK120150.1|CK120150
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|124914987|gb|EH988861.1|EH988861
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATT
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATT
EST: gi|124844216|gb|EH928653.1|EH928653
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAG
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAG
EST: gi|86056013|gb|DR351770.1|DR351770
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055976|gb|DR351733.1|DR351733
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055968|gb|DR351725.1|DR351725
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGANGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056009|gb|DR351766.1|DR351766
EST:     GCTTATCGAAGAGGCTCGCSATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGG
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGG
EST: gi|124802326|gb|EH891257.1|EH891257
EST:     CTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGA
genomic: CTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGA
EST: gi|86055988|gb|DR351745.1|DR351745
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86075224|gb|DR370981.1|DR370981
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|124896577|gb|EH972791.1|EH972791
EST:     TCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: TCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|116399053|gb|EG441645.1|EG441645
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAGTGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86056000|gb|DR351757.1|DR351757
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCASATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|86055995|gb|DR351752.1|DR351752
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATCG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
EST: gi|47830486|gb|CK120170.1|CK120170
EST:     GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTG                         AGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA
genomic: GCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGgttcgtactc ... gcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttacaacatgttcttcaccatggagttgtaatttgttctttttgcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCT
                                 tttgttctttttgc  CT-rich tract
                              taatttgttcttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttccaatggttttagaatgatggcttatttgttctgattttgtcatttacaacatgttcttcaccatggagttgtaatttgttctttttgcatatgcagAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCT

cttccaa
- - - - ggtttta
- - - - - - - - - - - - - - - - - - gattttg
- - - - - - - - - - - - - - - - - - - - - - - - -acaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcacca