1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagacaaagatttgatttgattggatatttggattgtcctgtgaccctttggttcggaaccttggaaactgatagatttatgttcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACCTTAAG
species | Arabidopsis thaliana |
transcript | AT5G51970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTGGTATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTG GTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGEST: gi|124740755|gb|EH831917.1|EH831917
genomic: GGTTGGTATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTGgtaagacaaa ... tcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTG
EST: TATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTG GTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGEST: gi|116466832|gb|EG509424.1|EG509424
genomic: TATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTGgtaagacaaa ... tcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTG
EST: TTTCTTC-TCCTTCCGTTG GTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGEST: gi|116467235|gb|EG509827.1|EG509827
genomic: TTTCTTCTTCCTTCCGTTGgtaagacaaa ... tcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTG
EST: GGTTGGTATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTG GTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGEST: gi|124786142|gb|EH875821.1|EH875821
genomic: GGTTGGTATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTGgtaagacaaa ... tcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTG
EST: TACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTG GTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTG
genomic: TACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTGgtaagacaaa ... tcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTG
ctgtgaccctttggttcggaaccttggaaactgatagatttatgttcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACCTTAAG
aactgat putative branch site (score: 3)
ttcattc putative PPT
atagatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaaagatttgatttgattggatatttggattgtcctgtgaccctttggttcggaaccttggaaactgatagatttatgttcattcaaagGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG