1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gattgtgaattggtgtagaaagttccgatttttagggtttattggtgttttcgattcgtgttgtgttgtgctcatgattaagcgtgtttttcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
species | Arabidopsis thaliana |
transcript | AT5G50870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGGTACATTTCAGATCGATATCACTATGCCAG ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTT-CAACTAAAGTTTGEST: gi|86075428|gb|DR371185.1|DR371185
genomic: GGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
EST: TCAGATCGATATCACTATGCCAG ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGEST: gi|124918160|gb|EH992025.1|EH992025
genomic: TCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
EST: CGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAG ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGCEST: gi|124890657|gb|EH969559.1|EH969559
genomic: CGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGC
EST: CGGTACTCCTTACGGAGGCGGTACATTTCAGATCGATATCACTATGCCAG ATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTT
genomic: CGGTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGgttctaacca ... tcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTT
tgttttcgattcgtgttgtgttgtgctcatgattaagcgtgtttttcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
tgtttttc CT-rich tract
atgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgtgaattggtgtagaaagttccgatttttagggtttattggtgttttcgattcgtgttgtgttgtgctcatgattaagcgtgtttttcgattgcagATGGGTATCCATTTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG